Chicken genome selection

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August undefined, 2024

WebMar 15, 2024 · Guangxi chickens play a crucial role in promoting the high-quality development of the broiler industry in China, but their value and potential are yet to be … WebJun 4, 2012 · The National Human Genome Research Institute (NHGRI) has supported a chicken ( Gallus gallus) genome sequencing project that produced of 6-fold whole …

Chicken Genome Overview - Genome Reference Consortium

WebDec 9, 2004 · The chicken has joined the growing group of animals whose genome has been sequenced. The findings, published today in the journal Nature, reveal that, like us, … WebMay 26, 2016 · Results. Sequences obtained were orthologous with a wide diversity of functional genes despite the sequencing of a single tissue type. Individual and composite assemblies contain more than 7900 unique protein coding transcripts in each of LSK and rowi that show strong homology with chicken (Gallus gallus), including those associated … remote access trojan mac

Frontiers Genomic Analyses Reveal Adaptation to Hot Arid …

WebMar 10, 2010 · Chicken was selected for this study because the fairly small genome size (∼ 1 Gb) made it easier to achieve sufficient sequence … WebApr 29, 2024 · In this study, we performed whole genome sequencing of 127 chicken including the red jungle fowl and multiple populations of commercial broilers and layers to perform a systematic screening of adaptive changes in modern chicken. Analysis of selection provided a comprehensive list of several tens of independent loci that are … WebMar 23, 2024 · Background Availability of single nucleotide polymorphism (SNP) genotyping arrays and progress in statistical analyses have allowed the identification of genomic … remote access university of manchester

How chickens tripled in size since the 1950s

A combination of genome-wide association study and selection

WebApr 20, 2024 · Detection of selective sweeps. Genome-wide scans for signals of selection attributable to the YFCs phenotype identified 268 analytical windows within the top 1% of the Locus-specific branch length (LSBL) test, and 370 windows in the π-ratio test (Additional files 10 and 11).These correspond to 366 and 504 positively selected genes (PSGs), … WebMar 27, 2024 · GRCg6a. Release notes: GRCg6a is an update to the chicken reference assembly that replaces GRCg6. Chromosome coordinates in the two assemblies are unchanged. The GRCg6a update was produced to exclude four unlocalized GRCg6 … The chicken genome assembly was produced by the International Chicken … remote access to phone cameraWebJun 25, 2024 · Rubin, C. J. et al. Whole-genome resequencing reveals loci under selection during chicken domestication. Nature 464 , 587–591 (2010). Article CAS PubMed … remote access to sage

"WebMay 12, 2024 · In order to be compatible with the latest version of the chicken reference genome, we transformed the coordinates to the newest genome assembly by using the ... Rubin CJ, Zody MC, Eriksson J, Meadows JR, Sherwood E, Webster MT, et al. Whole-genome resequencing reveals loci under selection during chicken domestication. … " - Chicken genome selection

Chicken genome selection

USE OF WHOLE GENOME SEQUENCING TO IDENTIFY SELECTION …

WebJun 26, 2024 · Chicken-human genome co-linearity analysis of the positively selected regions identified a number of genes and one conserved lncRNA (Table S5). Identified … WebChicken is a major source of protein for the increasing human population and is useful for research purposes. There are almost 1,600 distinct regional breeds of chicken across …

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WebJan 17, 2024 · Alignment of sequence reads to the reference chicken genome assembly (GCA_000002315.3) []). To further examine the potential impact of sequencing platform on variant calls, we performed a phylogenetic analysis on the variants common to lines sequenced by SOLiD and Illumina platforms (Fig. 1).Reassuringly our analysis grouped … WebApr 13, 2024 · These findings suggest that the CRISPRa and CRISPRi toolkits are an effective and adaptable platform for studying the chicken genome by targeted transcriptional modulation. Next Article in Journal. ... Waltham, MA, USA, 24–48 h post transfection, and the drug selection was maintained to establish cell lines for at least 2 …

WebMar 24, 2024 · The wooden breast QTL-rich region of chicken chromosome 5 (GGA5) has highly conserved synteny with human chromosome 11 (HSA11), especially compared to homologous regions in the mouse genome on ... WebMay 2, 2005 · 2 May 2005. 8 minute read. Sequencing of the Chicken Genome: An Overview - By Hybro B.V. - Research papers published on 9 December 2004 in a special issue of the scientific journal Nature show that geneticists from around the world have assembled the entire chicken genome sequence. Following pioneering work on the …

WebMay 31, 2011 · Background In livestock species like the chicken, high throughput single nucleotide polymorphism (SNP) genotyping assays are increasingly being used for whole genome association studies and as a tool in breeding (referred to as genomic selection). To be of value in a wide variety of breeds and populations, the success rate of the SNP … WebSep 9, 2024 · Various regions of the chicken genome have been under natural and artificial selection for thousands of years. The substantial diversity that exits among chickens …

WebApr 21, 2016 · The CRISPR/Cas9 system has been applied in a large number of animal and plant species for genome editing. In chickens, CRISPR has been used to knockout genes in somatic tissues, but no CRISPR-mediated germline modification has yet been reported. Here we use CRISPR to target the chicken immunoglobulin heavy chain locus in …

WebSep 3, 2024 · Sequencing and genomic variant. In the present study, we whole-genome re-sequenced a total of 126 chicken samples, generating a panel of clean data ranging from 9.5 to 60.2 billion base pairs (bp ... remote access windows vistaWebThe bones of chicken play an important role in supporting and protecting the body. The growth and development of bones have a substantial influence on the health and production performance in chickens. ... A combination of genome-wide association study and selection signature analysis dissects the genetic architecture underlying bone traits in ... lafortune golf course pro shopWebApr 26, 2024 · Here, a chicken 600k SNP-array was employed to detect the signals of artificial selection using 331 individuals from 9 breeds, including Jingfen (JF), Jinghong … remote alderhey nhs ukWeb14 hours ago · Genome-Wide Selective Sweep Analysis and Gene Annotation. To define candidate regions that undergone directional selection in the Lueyang black bone chicken, we calculated the population differentiation index (F ST) between black-feathered chickens and white-feathered chickens using the approach as previously described (Weir and … remote accounting jobs salaryWebJun 26, 2024 · Comparison of the two chicken lines demonstrated striking phenotypic differences in the continuous and directional selection of adiposity (p < 0.05) (Figures 1 A and S2).In addition, we investigated how chicken genomes changed dynamically by testing the changes in heterozygosity of the lean line (LL) and fat line (FL) between G4 and G18, … remote access windows xp from windows 10Web1 day ago · The wing-like appendages of batoid fishes (skates and rays) (Fig. 1a) are fascinating examples, in which the pectoral fins extend anteriorly and fuse with the head. This unique structure creates ... laforgue luggage shop in oaklandWebApr 18, 2024 · Genomic DNA was extracted from these samples following standard procedures. In total, we generated ∼1.69 trillion bases of resequencing data of the whole genomes from 78 birds (18.03-fold coverage for each individual) on the Illumina Hiseq 2500 platform ( Additional File 1: Table S1 ). In addition, previously published genome … remote access to xbox one